CAC Software
The following list of software is available on the Flux cluster. To access any of these packages, use the module load modulename command; for more information on the module command see our module documentation page.
Many of these packages have multiple versions, to see available versions, type module avail.
Users are not limited to the lists here. If you need a different package contact the CAC you can also install anything in your own directory.
| Module Name | Versions | Description | Additional Information | ||
| R | 2.15.0 2.15.1 |
R is a software environment for statistical computing | Flux Documentation Vendor Website Manual |
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| abaqus | 6.11 6.12 6.12-3 |
abaqus is set of general purpose nonlinear finite element analysis (FEA) tools | Flux Documentation Vendor Website Manual |
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| abinit | 6.12.3-intel 7.0.3-intel |
ABINIT is a package whose main program allows one to find the total energy, charge density and electronic structure of systems made of electrons and nuclei (molecules and periodic solids) within Density Functional Theory (DFT), using pseudopotentials and a planewave basis. | Vendor Website Manual |
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| acml | 5.1.0-gcc 5.1.0-gcc_mp |
ACML is the AMD Core Math Library, which contains functions from BLAS and LAPACK, among other things, optimized for the AMD CPUs | Vendor Website Manual |
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| adina | 8.8.3 | ADINA System for the analysis of solids, structures, fluids and fluid flow with structural interactions. | Vendor Website |
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| ampl | 12.2 | AMPL is a comprehensive, powerful and flexible algebraic modeling language | CAEN Documentation Vendor Website |
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| ansys | 14.0 14.5 |
ANSYS, produced by ANSYS, Inc., is a finite element simulation tool that incorporates multiphysics to simulate real world conditions. This allows users to analyze parts for behavior under multiple physical forces simultaneously | CAEN Documentation Vendor Website |
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| ase | 3.6.0.2515 | The Atomic Simulation Environment (ASE) is the common part of the simulation tools developed at CAMd. ASE provides Python modules for manipulating atoms, analyzing simulations, visualization etc. | Vendor Website Manual |
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| boost | 1.50.0-gcc 1.50.0-intel |
Boost provides free peer-reviewed portable C++ source libraries. | Vendor Website Manual |
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| cfour | v1 | CFOUR (Coupled-Cluster techniques for Computational Chemistry) is a program package for performing high-level quantum mechanical calculations on atoms and molecules. | Vendor Website Manual |
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| cfx | 14.0 14.5 |
ANSYS CFX is a high-performance, general purpose CFD program that has been applied to solve wide-ranging fluid flow problems. | Vendor Website |
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| chemkin | 10112 | CHEMKIN software enables the simulation of complex chemical reactions | Vendor Website Manual |
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| cmake | 2.8.8 | CMake is a family of tools designed to build, test and package software. | Vendor Website Manual |
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| comsol | 3.5a 4.3 |
COMSOL Multiphysics is a modeling package for the simulation of any physical process you can describe with partial differential equations | Flux Documentation CAEN Documentation Vendor Website Manual |
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| converge | 2.0.0_020713 2.0.0_090612 |
Licensing: This software is licensed for academic, noncommercial use at the University of Michigan | Vendor Website |
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| cplex | 12.4 | CPLEX is a high-performance optimizer for linear programming | Flux Documentation CAEN Documentation Vendor Website Manual |
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| cubit | 13.2 | loads the CUBIT Mesh Generation Kit | Vendor Website Manual |
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| cuda | 4.2 | CUDA is the development environment for using nVidia's graphics cards for processing | Flux Documentation Vendor Website Manual |
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| dakota | 5.2 | Dakota -- A Multilevel Parallel Object-Oriented Framework for design optimi | Vendor Website Manual |
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| ddt | 3.2 4.0 |
Distributed Debugging Tool is a comprehensive graphical debugger designed for the complex task of debugging parallel code. | Flux Documentation Vendor Website Manual |
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| dytran | 2012 | Dytran is an explicit finite element analysis (FEA) solution for analyzing complex nonlinear behavior involving permanent deformation of material properties, or the interaction of fluids and structures. | Flux Documentation CAEN Documentation Vendor Website Manual |
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| espresso | 5.0.1 5.0.2 |
Espresso: Electronic Structure Computation Software | Flux Documentation Vendor Website Manual |
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| fftw | 3.3.2 3.3.2 3.3.2 |
FFTW is a C/Fortran subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions | Vendor Website Manual |
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| flexlm | 11.7.0.0 | The Flexlm is a common floating license implimentation co | Vendor Website |
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| fluent | 14.0 14.5 |
fluent - a comprehensive CFD (computational fluid dynamics) analysis tool. The FLUENT solver can be used to model turbulence, combustion, and multiphase applications. | Flux Documentation CAEN Documentation Vendor Website |
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| flux | Adds the Flux software repository to the modules system | ||||
| freesurfer | 5.2.0 | Program to overlay fMRI data onto reconstructed cortical surfaces. | Vendor website |
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| fsl | 5.0.2.2 | FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data. | Vendor Website |
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| g95 | 0.94 | Users should use gfortran rather than G95. G95 is a stable, production Fortran 95 compiler available for multiple cpu architectures and operating systems. Innovations and optimizations continue to be worked on. Parts of the F2003 and F2008 standards have been implemented in g95 | Vendor Website |
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| gambit | 2.4 | gambit - GAMBIT is the preprocessor supplied with Fluents computational fluid dynamics (CFD) software. | Vendor Website |
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| gaussian | 09-revc | Gaussian is an electronic structure program that predicts the energies, molecular structures, and vibrational frequencies of molecular systems, along with numerous molecular properties derived from these basic computation types. | Flux Documentation CAEN Documentation Vendor Website Manual |
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| gcc | 4.4.6 4.6.3 4.7.0 4.8.0 |
The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada | Vendor Website Manual |
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| git | 1.8.1 | Git is a distributed version control system designed to handle everything from small to very large projects with speed and efficiency. | Vendor Website Manual |
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| globus | 5.2.1 | Globus provides the GSI/MyProxy in addition to GridFTP cli tools | Vendor Website |
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| gnuplot | 4.2.6 4.6.0 |
Gnuplot is a portable command-line driven graphing utility for linux. Gnuplot supports many types of plots in either 2D and 3D. It can draw using lines, points, boxes, contours, vector fields, surfaces, and various associated text. It also supports various specialized plot types. | Vendor Website Manual |
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| gromacs | 4.5.5 | GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. | Flux Documentation Vendor Website Manual |
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| gsl | 1.14 1.15 |
The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting. There are over 1000 functions in total with an extensive test suite | Vendor Website Manual |
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| gti | 7.x | GT-SUITE offers the only true virtual engine/powertrain tool, capable of integrated simulations of the total engine and powertrain system | Vendor Website |
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| h5py | 2.1.0 | fast, flexible storage of enormous amounts of data. | Vendor Website Manual |
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| hadoop | 1.1.0 | Hadoop is an open source data processing framework. | Vendor Website Manual |
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| hdf5 | 1.8.5-p1 1.8.5-p1 1.8.9 1.8.9 1.8.9 1.8.9 1.8.9 1.8.9 1.8.9 1.8.9 1.8.9 |
HDF5 is a set of file formats and libraries designed to store and organize large amounts of numerical data. | Vendor Website Manual |
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| helios | 1.10 | loads the HELIOS Generalized Geometry Lattice Analysis package | Vendor Website |
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| hfss | 13.0 14.0 15.0 |
loads the hfss environment for Full-Wave Sprice extraction and electromagnetic field simulation | Flux Documentation Vendor Website |
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| hive | 0.9.0 | Hive is a part of Hadoop, an open source data processing framework. | Vendor Website Manual |
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| hpctoolkit | 5.3.2 | HPCToolkit is an integrated suite of tools for measurement and analysis of program performance on computers ranging from multicore desktop systems to the nation's largest supercomputers. By using statistical sampling of timers and hardware performance counters, HPCToolkit collects accurate measurements of a program's work, resource consumption, and inefficiency and attributes them to the full calling context in which they occur. | Vendor Website Manual |
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| hwloc | 1.5.1 | The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. | Vendor Website Manual |
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| hypre | 2.8.0b 2.8.0b |
Hypre is a library for solving large, sparse linear systems of equations on massively parallel computers. | Flux Documentation Vendor Website Manual |
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| idl | 8.2 | IDL is software for data analysis, visualization, and cross-platform application development | CAEN Documentation Vendor Website |
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| imsl | fnl | ERROR:102: Tcl command execution failed: set mkl_dir $::env(MKL_ROOT) | |||
| intel-comp | 11.1 12.1 13.0 13.0.1 |
This loads both the Intel C and Fortran compilers | Vendor Website |
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| isr | Adds the ISR software repository to the modules system | ||||
| java | 1.6.0 | Java is a general-purpose, concurrent, class-based, object-oriented language that is specifically designed to have as few implementation dependencies as possible. | Vendor Website |
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| lahey | 6.2 | loads the Fujitsu Lahey LF95 environment | Vendor Website |
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| lammps | 4Jul12 8Oct12 |
A classical molecular dynamics code LAMMPS, which stands for Large-scale Atomic/Molecular Massively Parallel Simulator | Flux Documentation Vendor Website Manual |
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| lsa | Adds the LSA software repository to the modules system | ||||
| lsdyna | 971-R5.1.1 971-R610 |
LS-DYNA is a general purpose transient dynamic finite element program; we support a parallel version | Vendor Website Manual |
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| maple | 16 | Maple is a mathematical computing engine | Vendor Website Manual |
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| marc | 2012 | MARC is a non-linear FEA program | Vendor Website |
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| mathematica | 7.0 8.0 9.0 |
Mathematica is a compuer algebra system | Flux Documentation CAEN Documentation Vendor Website Manual |
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| matlab | 2010b 2012a 2012b 2013a |
Matlab is interactive package for numerical analysis, matrix computation, control system design, and linear system analysis and design | Flux Documentation CAEN Documentation Vendor Website Manual |
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| matplotlib | 1.1.1 | matplotlib is a python 2D plotting library which produces publication quality figures in a variety of hardcopy formats and interactive environments across platforms | Vendor Website Manual |
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| maxwell | 15.0.1 | Loads the Ansys Maxwell environment for electromagnetic field simulation. | Vendor website |
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| mcnp5 | 1.6 | loads the mcnp5 environment | Vendor Website |
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| mcnpx | 2.7.0 | loads the mcnpx environment | Vendor Website |
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| med | Adds the Medical School software repository to the modules system | ||||
| mercurial | 1.4 2.3 |
Mercurial is a free, distributed source control management tool. It offers you the power to efficiently handle projects of any size while using an intuitive interface. It is easy to use and hard to break, making it ideal for anyone working with versioned files. | Vendor Website Manual |
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| metis | 5.0.2 5.0.2 5.0.2 |
METIS - Serial Graph Partitioning and Fill-reducing Matrix Ordering | Vendor Website |
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| mkl | 10.3.7 11.0 |
This loads the Intel Math Kernel Library (MKL) runtime. | Flux Documentation Vendor Website Manual |
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| moab | loads the Moab scheduling command environment | Vendor Website Manual |
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| molpro | 2010.1 2010.1-mrcc |
Molpro is a complete system of ab initio programs for molecular electronic structure calculations | Vendor Website Manual |
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| mpb | 1.4.2 | This program computes definite-frequency eigenstates (harmonic modes) of Maxwell's equations in periodic dielectric structures for arbitrary wavevectors, using fully-vectorial and three-dimensional methods. It is especially designed for the study of photonic crystals (a.k.a. photonic band-gap materials), but is also applicable to many other problems in optics, such as waveguides and resonator systems. (For example, it can solve for the modes of waveguides with arbitrary cross-sections.) | Vendor Website Manual |
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| mpi4py | mpi-1.6.0 | MPI for Python (mpi4py) provides bindings of the Message Passing Interface (MPI) standard for the Python programming language, allowing any Python program to exploit multiple processors. | Vendor Website Manual |
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| msmodel | 5.5 6.0 |
Material Studio -- a software environment that brings the world's most advanced and validated materials simulation technology to the CAC | Flux Documentation CAEN Documentation Vendor Website |
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| nag | 5.1 5.2 |
NAGWARE - f95/f90 fortran compiler | Flux Documentation CAEN Documentation Vendor Website Manual |
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| nastran | 2012 | Nastran is a powerful general purpose finite element analysis solution for small to complex assemblies | Flux Documentation CAEN Documentation Vendor Website |
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| ncl | 6.1.0-beta | NCL is an interpreted language designed specifically for scientific data analysis and visualization. Supports netCDF3 and 4, GRIP1 and 2 HDF-SDS, HDF4-EOS, binary, shapefiles, and ascii files. | Vendor Website Manual |
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| nco | 4.2.0 | The netCDF Operators, or NCO, are a suite of programs known as operators. Each operator is a standalone, command line program which is executed at the UNIX shell-level like, e.g., ls or mkdir. The operators take netCDF files as input, then perform a set of operations (e.g., deriving new data, averaging, hyperslabbing, or metadata manipulation) and produce a netCDF file as output. | Vendor Website Manual |
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| netcdf | 4.2.0 4.2.0 4.2.0 4.2.0 4.2.0 |
NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data | Vendor Website Manual |
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| numpy | 1.6.2 1.6.2-3k |
It contains a powerful N-dimensional array object, sophisticated (broadcasting) functions, tools for integrating C/C++ and Fortran code, useful linear algebra, Fourier transform, and random number capabilities | Vendor Website Manual |
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| nwchem | 6.1.1 | NWChem aims to provide its users with computational chemistry tools that are scalable both in their ability to treat large scientific computational chemistry problems efficiently, and in their use of available parallel computing resources from high-performance parallel supercomputers to conventional workstation clusters. | Vendor Website Manual |
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| octopus | 4.0.1 | Octopus is a scientific program aimed at the ab initio virtual experimentation on a hopefully ever-increasing range of system types. Electrons are described quantum-mechanically within density-functional theory (DFT), in its time-dependent form (TDDFT) when doing simulations in time. Nuclei are described classically as point particles. Electron-nucleus interaction is described within the pseudopotential approximation. | Vendor Website Manual |
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| openfoam | 1.6-ext-07122012 1.7.x-07142011 2.1.x-06062012 2.2.x-03182013 |
OpenFOAM CFD Toolbox | Vendor Website Manual |
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| openmpi | 1.4.5 1.6.0 1.6.0 1.6.0 1.6.0 1.6.0 1.6.0 1.6.0 1.6.0 1.6.1 1.6.1 1.6.1 1.6.2 1.6.2 1.6.2 1.6.2 1.6.2 1.6.2 1.6.2 1.6.2 1.6.2 1.6.2 1.6.2 1.6.3 1.6.4 1.6.4 1.6.4 1.6.4 1.6.4 1.6.4 1.6.4 |
loads the OpenMPI/GCC compiler environment | Vendor Website Manual |
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| parmetis | 4.0.2 4.0.2 4.0.2 |
ParMETIS is an MPI-based parallel library that implements a variety of algorithms for partitioning unstructured graphs, meshes, and for computing fill-reducing orderings of sparse matrices. ParMETIS extends the functionality provided by METIS and includes routines that are especially suited for parallel AMR computations and large scale numerical simulations. | Vendor Website |
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| perfexpert | 2.1.2 | PerfExpert automatically analyzes the performance of programs and suggests optimizations to alleviate the identified bottlenecks. It is intended to make performance assessment easy while providing accurate diagnoses of core, chip, and node-level performance bottlenecks. Because of this focus, it suffices (and is recommended) to use scaled-down data sets and resource configurations to obtain accurate analyses. | Vendor Website Manual |
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| petsc | 3.3-p6 3.3.0-p2 3.3.0-p2 3.3.0-p2 3.3.0-p2 |
PETSc is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations. It employs the MPI standard for parallelism. | Flux Documentation Vendor Website Manual |
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| pgi | 10.5 12.3 12.9 |
loads the PGI compiler environment | Flux Documentation Vendor Website Manual |
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| povray | 3.6.1 | loads povray a high-quality raytracer for 3D Graphics | Vendor Website Manual |
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| python | 2.6.6 2.7.3 3.2.3 |
This is not the provided python compiler from RedHat. Scipy 0.10.1 and Numpy 1.6.2 are also loaded. | Vendor Website |
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| scipy | 0.10.1 0.10.1-3k |
Scipy is open-source software for mathematics, science, and engineering. | Vendor Website Manual |
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| sph | Adds the SPH software repository to the modules system | ||||
| sqoop | 1.4.3 | Sqoop is a part of Hadoop, an open source data processing framework. | Vendor Website Manual |
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| starccm | 7.02 7.04 7.06 |
Star-ccm+ is a CFD application that supports parallel processing | Vendor Website |
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| subversion | 1.6.11 | loads the subversion source code managment system | Vendor Website Manual |
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| synopsys | 2009.06-SP2 2012.06 |
Synopsys Synthesis environment | Vendor Website |
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| tct | 5.2.1 | Teragrid/Xsede Client Toolkit for connecting with your Teragrid/Xsede portal password to Xsede/Teragrid resources using gsissh myproxy-login and globus-url-copy. | Flux Documentation Vendor Website |
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| tecplot | 2012 | Includes Tecplot 360 & Tecplot Focus | CAEN Documentation Vendor Website |
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| torque | Loads the Torque batch computing environment | Flux Documentation Vendor Website Manual |
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| vasp | 4.6.36Feb09 5.2.12.11Nov2011 5.3.2.13Sep2012 5.3.3.18Dec2012 |
VASP is a licensed package for performing ab-initio quantum-mechanical molecular dynamics (MD) | Flux Documentation Vendor Website Manual |
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| visit | 2.5.1 2.6.2 |
loads the Visit serial and parallel engine for visualization of large data | Flux Documentation Vendor Website Manual |
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| vmd | 1.9 | VMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting. | Vendor Website Manual |
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| wannier90 | 1.2 | Maximally-localised Wannier functions (MLWFs) and Wannier90, the computer program that calculates them. Both wannier90.x (the program) and libwannier.a (the library) are built and available. | Vendor Website Manual |
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| wrf | 3.4.1 | The Weather Research and Forecasting (WRF) Model is a next-generation mesoscale numerical weather prediction system designed to serve both operational forecasting and atmospheric research needs. It features multiple dynamical cores, a 3-dimensional variational (3DVAR) data assimilation system, and a software architecture allowing for computational parallelism and system extensibility. | Vendor Website Manual |
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| xsede | 5.2.1 | Xsede Client Toolkit for connecting with your Xsede portal password to Xsede resources using gsissh myproxy-login and globus-url-copy. | Flux Documentation Vendor Website |
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